For the suffix indicating nomenclature nomics The English language neologism omics informally refers to a field of study in biology ending in omics , such as genomics or proteomics . The related suffix ome is used to address the objects of study of such fields, such as the genome or proteome , respectively. Functional genomics aims at identifying the functions of as many genes as possible of a given organism. It combines different omics techniques such as transcriptomics and proteomics with saturated mutant collections. ref Hauke Holtorf, Marie Christine Guitton, Ralf Reski 2002 Plant functional genomics. Naturwissenschaften 89, 235 249. DOI 10.1007 s00114 002 0321 3 ref The suffix ome as used in molecular biology refers to a totality of some sort it is an example of a neo suffix formed by abstraction ... is where the first genome and proteome projects were carried out. Unrelated words in omics See nomics The word comic does not use the omics suffix it derives from Greek merriment an adjectival ... omics is sometimes used to create portmanteau words to refer to schools of economics such as Reaganomics . Current usage main List of omics topics in biology Many omes beyond the original genome have ... taking up omes and omics, as shown by the explosion of the use of these terms in PubMed since the mid ... Reflist External links Wiktionary omics http omics.org Omics.org , an openfree and comprehensive Omics list on the internet. http www.genomicglossaries.com content omes.asp List of omics , including references origins. Maintained by the CHI Cambridge Health Institute. http www.omicsworld.com Omics World , resources and information for omics research Lederberg J, McCray A. http lhncbc.nlm.nih.gov lhc docs published 2001 pub2001047.pdf Ome Sweet Omics A Genealogical Treasury of Words PDF 2 pages . The Scientist 15 7 8, Apr. 2, 2001. Commentary. DEFAULTSORT Omics Category English suffixes Omics Category Omics Category Genomics ar ca miques de omik es mica ko it omica nl omics ja ... more details
wikify date September 2011 unreferenced date September 2011 The Asian Young Researchers Conference on Computational and Omics Biology AYRCOB is a conference series for young researchers and students who are conducting their research in the fields of computational, omics and systems biology in Asia. The main objectives of AYRCOB are to promote international exchange among young researchers in Asia and to deliver lectures given by leading researchers. One of unique characteristics of AYRCOB is that the conference itself is organized by young researchers i.g. graduate students and post doctoral fellows . From the outstanding performance of young students, the Dean Prize of the Graduate School of Frontier Sciences by the University of Tokyo has been awarded to the committee in 2009 and 2011 respectively. Affiliated Organizations The AYRCOB has several affiliated organizations including Japan The University of Tokyo Korea Yonsei University Ehwa Womans University University of Science and Technology UST Taiwan National Yang Ming University National Cheng Kung University Taiwan International Graduate Program, Academia Sinica Institute of Bioinformatics and Structural Biology of National Tsing Hua University Singapore Nanyang Technological University Institute for Infocomm Research National University of Singapore National Junior College China Beijing Genomics Institute BGI Sponsors The AYRCOB has various sponsors including Japan The University of Tokyo Global COE Program Deciphering Biosphere from Genome Big Bang Japanese Society for Bioinformatics Korea Korean Bioinformation Center University of Science and Technology UST Daejeon Convention and Visitors Bureau Yonsei University Hankyoreh Media Group The Korea Institute of Science and Technology Information KISTI Taiwan Ministry of Education National Cheng Kung University NCKU National Science Council National Tsing Hua University Singapore The Asia Pacific Bioinformatics Network APBioNet PUB, Singapore s National Water Ag ... more details
Physiomics is a systematic study of physiome in biology . Physiomics employs bioinformatics to construct networks of physiology physiological features that are associated with genes , proteins and their networks. See also Omics Phenomics Genomics Proteomics External links http omics.org Omics.org The omics wiki site. A comprehensive omics list on the internet. http physiomics.org Physiomics.org An openfree wiki site for Physiomics. http www.genomicglossaries.com content omes.asp List of omics Lists far more than this page, with references origins. Maintained by the CHI Cambridge Health Institute. One of the earliest lists. http www.omicsworld.com Omics World Resources and information for omics research http www.physiomics.eu Information about Physiomics research Category Omics bioinformatics stub ko ... more details
Orphan date February 2009 Nutriomics is an omics study for nutrition and energy metabolism related genes and proteins. Nutriomics is a new field where traditional nutrition researchers adopt genomics technology such as large scale microarray analysis with food intake. See also Nutrigenomics Functional genomics External links http omics.org Omics.org A general omics portal. Category Nutrition biochem stub ... more details
The researchsome is the latest addition to the omics set of words, which comprises genomics , proteomics , metabolomics and related words dealing with scientific research, mostly in the biological sciences and related disciplines, like bioinformatics . Origin of term Devised partly as a joke, the term was coined by Ivan Erill, from UMBC , and first used in an oral communication at the 15th Evolutionary Biology Meeting at Marseilles France in 2011. ref 2011 http sites.univ provence.fr evol cgr index.php?option com content&view article&id 40&Itemid 40 15th EBM PROGRAM Evolutionary Biology Meeting at Marseilles . Retrieved December 14, 2011. ref Image Erill 2011 EBM Conference Researchsome.png thumb The original researchsome slide by Ivan Erill at the 2011 EBM meeting As opposed to other omic words, which originate as portmanteau from incorrect application of either the some suffix derived from the Greek soma, body as in chromosome or the nome suffix from the Greek nomos, custom or law as in economics , ref name pmid118166670 cite journal author Yadav SP title The wholeness in suffix omics, omes, and the word om journal J Biomol Tech volume 18 issue 5 pages 277 year 2007 pmid 18166670 pmcid PMC2392988 doi url issn ref ref name pmid9450566 cite journal author Kuska B title Beer, Bethesda, and biology how genomics came into being journal J Natl Cancer Inst volume 90 issue 2 pages 93 year 1998 pmid 9450566 doi url issn ref ref Jong Bhak 2011 http omics.org index.php History of Omics History of Omics The History of Omics as a generic name for various omics and a standalone biology discipline. Retrieved December 14, 2011. ref researchsome is among the few newly minted words in the biosciences that derives properly from soma and should be read as body of research . Obviously .... See also List of omics topics in biology Omics Genome Chromosome References reflist External links commons category Omics http sites.univ provence.fr evol cgr Evolutionary Biology Meeting at Marseilles ... more details
Orphan date November 2006 Mitointeractome is one of the many omics in biology. It is Mitochondrial Protein, genes and ligand Interactome External links http mitointeractome.org Mitointeractome http omics.org Omics.org Context date October 2009 Category Molecular biology biology stub ... more details
Volcano plot may refer to Sabatier principle a concept in chemical catalysis that relates the optimal concentrations of catalysts and substrates Volcano plot statistics a type of graph used to relate fold change to p value that is commonly used in genomics and other List of omics topics in biology omic experiments involving thousands of data points disambig ... more details
Qlucore is a company from Lund, Sweden , that provides bioinformatics software for the life science and biotech industries. The software Qlucore Omics Explorer analyzes data sets such as Gene expression microarrays, real time PCR MicroRNA microarrays, real time PCR DNA methylation microarrays Protein expression microarrays, antibody arrays, 2 D gels Any multivariate data of size up to 1000 x 100,000 The company founders are Thoas Fioretos, professor and senior consultant at the Division of Clinical Genetics at Lund University Hospital, Johan R de, associate professor of mathematics at Lund University, Magnus Fontes, dean of the Centre for Mathematical Sciences at Lund University and Carl Johan Ivarsson. References reflist BBC Read about how Qlucore Omics Explorer is used at King s College in London to analyze gene expression data from worms. http news.bbc.co.uk 2 hi technology 8386807.stm SP2 Magazine Read about how Qlucore solution enables new working models for biologists and statisticians. Page 33 and onwards. http www.labnews.co.uk laboratory article.php 4795 5 getting through the data maze Labnews Example were Qlucore Omics Explorer is used in leukemia research. http view.vcab.com ?vcabid eppScaelnSgcnph Bioinformatics stub Category Bioinformatics software ... more details
notability Neologisms date August 2011 orphan date August 2011 Organomics ref http dionisio.centropiaggio.unipi.it default.aspx ref is the development and study of Organ anatomy organ models and interconnected organ systems in order to better understand Tissue biology tissue Crosstalk biology crosstalk and how this crosstalk is used to orchestrate systemic physiology . Organome network maps can then be constructed to clarify the interaction between different organs. A task which would be of overwhelming complexity to accomplish in vivo can thus be broken down into more manageable elements using interconnected in vitro models. The models can be constructed using modular cell culture chambers . See also Omics Tissue Engineering Bioreactors List of omics topics in biology External Links Reflist Category Organ systems ... more details
Expressome refers to the whole set of gene expression in a Cell biology cell , tissue, organ, organisms, and species. Expressome is a slightly larger concept than transcriptome . Transcriptome is the set of transcripts, while expressome includes transcripts, protein s and other ligand s how much concentration . See also Bioinformatics DNA microarray Gel electrophoresis Mass spectrometry Protein sequencing Systems biology Expressomics List of omics topics in biology External links http bioinformatics.oupjournals.org Bioinformatics Journal Category Gene expression biology stub ko ... more details
Unreferenced stub auto yes date December 2009 Orphan date December 2009 Stem cell proteomics is a omics that analyzes the proteome s of stem cell s. Comparing different stem cell proteomes can reveal protein s that are important for cell differentiation stem cell differentiation . See also Stem cell genomics DEFAULTSORT Stem Cell Proteomics Category Stem cells Category Proteomics Cell biology stub ... more details
Unreferenced date November 2006 orphan date November 2009 Orfeome is the complete collection of open reading frames ORF that exists in the genome. ORFs are one of many different elements found in genomes, being part of the gene structure. The process of finding ORFs are done by computer programs such as GENSCAN . The term ORFeome reflects a new trend in biology that can be succinctly summarized as omics . DEFAULTSORT Orfeome Category Molecular genetics ar ... more details
2010 Orphan date April 2009 Context date October 2009 Biomics is the biology biological study of Biome s, and the processing that data, such as ecology ecological Community ecology communities of plant s, animal s, and Soil biology soil organism s. Uses Biomics is part of biogeography , ecosystem s, and habitat s research. Ecoregion s are grouped into both biomes and ecozone s. Biomics, in molecular biology , uses bioinformatics approaches to collectively analyze diverse biome data. A biome may contain very large scale omics information, such as metagenome and pangenome where genomic sequence s are mass produced. See also Biogeography Genomics Transcriptomics External links Wiktionary Biome Biomics http mbgnet.mobot.org Biomes of the world Missouri Botanic Garden http www.theglobaleducationproject.org earth global ecology.php 3 Global Currents and Terrestrial Biomes Map http biomics.org Biomics.org Biomics research, development, business site. http www.medicalbiomics.nl Medical Biomics Biomes Category Biomes Category Omics Category Biogeography Category Biology terminology Category Habitat ecology terminology ko ... more details
Unreferenced stub auto yes date December 2009 Orphan date December 2009 Stem cell genomics is an omics study that analyzes the genome s and their variation of stem cells . Comparing different stem cell genomes from different species can reveal important evolutionary history of development of species and also for stem cell differentiation. As the genome sequencing speed is increasing, stem cell genomics will become a field in genomics. The stemcellome is the total set of genes, proteins and their ligands in embryonic and adult stem cells. It includes stem cell chip derived microarray data. See also stem cell proteomics DEFAULTSORT Stem Cell Genomics Category Stem cells Cell biology stub ... more details
Orphan date February 2008 Nofootnotes article date March 2011 Clinomics is the study of omics data along with its associated clinical data. The term omics generally refers to a study of biology. As an example, genomics is the study of the entire genome of an organism and was the first omics term. As personalized medicine advances, clinomics will be a bridge between basic biological data and its effect on human health. As an example, there have been studies of the genes expressed in certain cancer tissues as a way of classification of the cancer and the putative best form of treatment. Already we know that certain genes such as BRCA1 are associated with a higher probability of developing breast cancer. Clinomics takes the next step by looking at not only the genetics of the patient, but also such data as mRNA , metabolites , and proteins associated with a patient and a disease. References cite journal last1 Clarke first1 Paul A last2 Workman first2 Paul title Innovative cancer drug targets genomics, transcriptomics and clinomics journal Expert Opinion on Pharmacotherapy volume 2 issue 6 pages 911 5 year 2001 pmid 11585007 doi 10.1517 14656566.2.6.911 cite journal last1 Garman first1 K. S. last2 Nevins first2 J. R. last3 Potti first3 A. title Genomic strategies for personalized cancer therapy journal Human Molecular Genetics volume 16 pages R226 32 year 2007 pmid 17911165 doi 10.1093 hmg ddm184 Category Clinical research Category Genomics ... more details
Multiple issues unreferenced August 2009 orphan November 2007 context September 2009 The totality of human speech components such as phoneme which is the smallest contrastive unit in the sound system of a language . Speechome is different from common biological omes such as genome , proteome , and expressome in that it is not biological. However, speechome reflects the omics trend in biology and science in general. Academic researchers in speech and hearing science and machine produced speech from Massachusetts, according to a CNN news story from March 2011, used complex recording devices and microphones to record every aspect of the evolution of their son s speech over the time span of three years with the use of complex algorithms this enabled them to trace the development and context of individual words and phrases across that time. Ling stub Category Linguistic units ... more details
The Variome is the whole set of genetic variation s found in populations of species that have gone through a relatively short evolution change. For example, among humans, about 1 in every 1,200 nucleotide base s differ. However, as the human species diverged only 10,000 years ago, this variation rate is comparatively small. In practice, the variome can be the sum of the single nucleotide polymorphisms SNPs of the population. Variomics is the study of variome and a branch of bioinformatics . Projects There are a number of international project studying the human variome, including the International HapMap Project and the Human Variome Project HVP . The HapMap Project aims to identify and catalog genetic similarities and differences among humans. The HVP aims to collect data on all human genetic variation. See also Single nucleotide polymorphism DNA sequence International HapMap Project OMIM Omics References http variome.net Variome.net Variome information portal site. http www.variome.org Human Variome Project http www.bio itworld.com newsitems 2006 may 05 12 06 human variome project Human Variome Project Set to Launch , May 12, 2006 http www.nature.com ng journal v39 n4 full ng0407 423.html What is the Human Variome Project? cite journal author Ring H, Kwok P, Cotton R title Human Variome Project an international collaboration to catalogue human genetic variation. journal Pharmacogenomics volume 7 issue 7 pages 969 72 year 2006 pmid 17054407 doi 10.2217 14622416.7.7.969 External links http www.hgvs.org Human Genome Variation Society http omics.org Omics.org General Omics topics http variomics.net Variomics.net The earliest variomics project site http personalgenome.net PersonalGenome.net openfree Personal Genome project home page Free Genome project Category Population genetics Category DNA Category Evolutionary biology ko ... more details
Orphan date April 2011 infobox biodatabase title KaPPA View4 logo File Database.png description metabolic pathway database scope organism center laboratory Kazusa DNA Research Institute author Nozomu Sakurai pmid Sakurai & al. 2011 ref name pmid21097783 released 2010 standard format url http kpv.kazusa.or.jp kpv4 download webservice sql sparql webapp standalone license versioning frequency curation bookmark version KaPPA View4 is a metabolic pathway database containing data about metabolic regulation from omics data. ref name pmid21097783 cite journal quotes yes last Sakurai first Nozomu authorlink coauthors Ara Takeshi, Ogata Yoshiyuki, Sano Ryosuke, Ohno Takashi, Sugiyama Kenjiro, Hiruta Atsushi, Yamazaki Kiyoshi, Yano Kentaro, Aoki Koh, Aharoni Asaph, Hamada Kazuki, Yokoyama Koji, Kawamura Shingo, Otsuka Hirofumi, Tokimatsu Toshiaki, Kanehisa Minoru, Suzuki Hideyuki, Saito Kazuki, Shibata Daisuke year 2011 month Jan title KaPPA View4 a metabolic pathway database for representation and analysis of correlation networks of gene co expression and metabolite co accumulation and omics data journal Nucleic Acids Res. volume 39 issue Database issue pages D677 84 publisher location England issn pmid 21097783 doi 10.1093 nar gkq989 bibcode oclc id url pmc 3013809 language eng format accessdate laysummary laysource laydate quote ref References references See also metabolic pathway External links http kpv.kazusa.or.jp kpv4 Biodatabase stub Category Biological databases Category Gene expression Category Metabolism ... more details
Orphan date May 2011 infobox biodatabase title Ciona intestinalis protein database logo File Database.png description repository of large scale omics data, bioinformatic analyses and curated annotation scope organism Ciona intestinalis center Hokkaido University , Sapporo, Japan laboratory Graduate School of Information Science and Technology, author Toshinori Endo pmid Endo & al. 2011 ref name pmid21071393 released 2010 standard format url http cipro.ibio.jp 2.5 download webservice sql sparql webapp standalone license versioning frequency curation bookmark version 2.5 The Ciona intestinalis protein database CIPRO is a protein database for the tunicate species Ciona intestinalis C. intestinalis . ref name pmid21071393 cite journal quotes yes last Endo first Toshinori authorlink coauthors Ueno Keisuke, Yonezawa Kouki, Mineta Katsuhiko, Hotta Kohji, Satou Yutaka, Yamada Lixy, Ogasawara Michio, Takahashi Hiroki, Nakajima Ayako, Nakachi Mia, Nomura Mamoru, Yaguchi Junko, Sasakura Yasunori, Yamasaki Chisato, Sera Miho, Yoshizawa Akiyasu C, Imanishi Tadashi, Taniguchi Hisaaki, Inaba Kazuo year 2011 month Jan title CIPRO 2.5 Ciona intestinalis protein database, a unique integrated repository of large scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality journal Nucleic Acids Res. volume 39 issue Database issue pages D807 14 publisher location England issn pmid 21071393 doi 10.1093 nar gkq1144 bibcode oclc id url pmc 3013717 language eng format accessdate laysummary laysource laydate quote ref References references See also Ciona intestinalis External links http cipro.ibio.jp 2.5 Biodatabase stub Category Biological databases Category Ascidiacea Category Invasive animal species Category 2010 introductions ... more details
Chemogenomics is the study of genomics genomic responses to chemical compound s. The goal is the rapid identification of novel drug s and drug target s, embracing multiple early phase drug development drug discovery technologies ranging from drug target identification target identification and drug target validation validation , through compound design and chemical synthesis , to biological testing and ADME profiling. See also Genomics Structural genomics Pharmacogenetics Pharmacogenomics Toxicogenomics Bioinformatics Cheminformatics Computational chemistry Molecular modelling QSAR Proteochemometrics References Chemogenomics in Drug Discovery A Medicinal Chemistry Perspective , H. Kubinyi Editor , G. M ller Editor , R. Mannhold Series Editor , G. Folkers Series Editor , Wiley VCH, 2004 .ISBN 3 527 30987 X External links http www.kubinyi.de dd 03.pdf Kubinyi s slides Medicinal chemistry genomics footer pharma stub Category Computational chemistry Category Genomics Category Omics Category Pharmacology Category Pharmaceutical industry Category Cheminformatics Ar de Chemische Genetik fr Chimiog nomique ko ... more details
Orphan date February 2009 Membranome is the set of biological membranes existing in a specific organism. The term was proposed by British biologist Thomas Cavalier Smith ref Membranome and Membrane Heredity in Development and Evolution by Thomas Cavalier Smith , in Organelles, Genomes and Eukaryote Phylogeny An Evolutionary Synthesis in the Age of Genomics Editors Robert P. Hirt David S. Horner ISBN 978 0 415 29904 6 http books.google.com books?id RpOO3VlVjNYC&pg RA1 PA335&lpg RA1 PA335&dq membranome Cavallier&source bl&ots P6oX22UltG&sig 5rZ9zqvwuIaLhZs1cp V4QJTYs&hl en&ei AAknS7TwDovmMezt1YoM&sa X&oi book result&ct result&resnum 1&ved 0CAwQ6AEwAA v onepage&q &f false ref to discuss epigenetics of biological membranes. The term was also used to define the entire set of membrane proteins ref Ghosh D, Beavis RC, Wilkins JA, The identification and characterization of membranome components, JOURNAL OF PROTEOME RESEARCH Volume 7 Issue 4 Pages 1572 1583. ref or a combination of membrane proteome and lipidome . References references Category Membrane biology Category Omics ja ... more details
Orphan date April 2011 infobox biodatabase title GlycomeDB logo File Database.png description Glycomics carbohydrate structures . scope organism center laboratory German Cancer Research Center, Heidelberg, Germany. author Ren Ranzinger pmid Ranzinger & al. 2011 ref name pmid21045056 released 2008 standard format url http www.glycome db.org download webservice sql sparql webapp standalone license versioning frequency curation bookmark version GlycomeDB is a database of Carbohydrate carbohydrates including structural and taxonomic data. ref name pmid21045056 cite journal quotes yes last Ranzinger first Ren authorlink coauthors Herget Stephan, von der Lieth Claus Wilhelm, Frank Martin year 2011 month Jan title GlycomeDB a unified database for carbohydrate structures journal Nucleic Acids Res. volume 39 issue Database issue pages D373 6 publisher location England issn pmid 21045056 doi 10.1093 nar gkq1014 bibcode oclc id url pmc 3013643 language eng format accessdate laysummary laysource laydate quote ref References references See also Glycomics External links http www.glycome db.org Biodatabase stub Category Biological databases Category Omics Category Glycomics Category Carbohydrate chemistry Category Carbohydrates Category Sugar ... more details
The African Centre for Gene Technologies ACGT Pretoria is located on the Experimental Farm of the University of Pretoria campus, and was established by Council for Scientific and Industrial Research CSIR , the University of Pretoria, the University of the Witwatersrand , the University of Johannesburg and the Agricultural Research Council ARC . The aim is to create a collaborative network of excellence in advanced biotechnology, with specific focus on the omics . History ACGT is a product of the Southern Education and Research Alliance SERA and was established in 2001 as the SERA biotechnology task team. ACGT has since grown into a regional initiative. ref www.acgt.co.za profiles Burton.php ref External links http www.acgt.co.za African Centre for Gene Technologies web site http www.csir.co.za CSIR web site http www.up.ac.za University of Pretoria web site http www.wits.ac.za University of the Witwatersrand web site http www.uj.ac.za University of Johannesburg web site http www.arc.agric.za Agricultural Research Council web site Southern Education and Research Alliance University of Pretoria University of the Witwatersrand University of Johannesburg References Reflist coord missing South Africa Category Genetics or genomics research institutions Category Research institutes in South Africa Category University of Pretoria Category University of the Witwatersrand Category University of Johannesburg ... more details
Cytomics is the study of Cell biology cell systems cytomes at a single cell level. It combines all the bioinformatic knowledge to attempt to understand the molecular architecture and functionality of the cell system Cytome . Much of this is achieved by using molecular and microscopic techniques that allow the various components of a cell to be visualised as they interact in vivo . See also Cytome EuroPhysiome Flow cytometry Genomics Human Genome Project Lipidomics List of omics topics in biology Metabolomics Microscopy Omics Proteomics Tissue microarray References Reflist Bernas T., Gregori G., Asem E. K., Robinson J. P., Integrating cytomics and proteomics, Mol Cell Proteomics. 2006 Jan 5 1 2 13. Chen X., Velliste M., Murphy R. F., Automated interpretation of subcellular patterns in fluorescence microscope images for location proteomics, Cytometry A. 2006 Jul 69 7 631 40. Davies E., Stankovic B., Azama K., Shibata K., Abe S., Novel components of the plant cytoskeleton A beginning to plant cytomics , Plant Science, Invited Review, Plant Science 2001 160 2 185 196. Herrera G., Diaz L., Martinez Romero A., Gomes A., Villamon E., Callaghan R. C., O connor J. E., Cytomics A multiparametric, dynamic approach to cell research, Toxicol In Vitro. 2006 Jul 22. Kriete A., Cytomics in the realm of systems biology, Cytometry A. 2005 Nov 68 1 19 20. Murphy R. F., Cytomics and location proteomics automated interpretation of subcellular patterns in fluorescence microscope images, Cytometry A. 2005 Sep 67 1 1 3. Schubert W., Cytomics in characterizing toponomes towards the biological code of the cell, Cytometry A. 2006 Apr 69 4 209 11. Valet G., Tarnok A, Cytomics in predictive medicine, Cytometry, 2003, 53B 1 3. Valet G., Predictive medicine by cytomics and the challenges of a human cytome project, Business Briefing Future Drug Discovery 2004, Ed E Cooper, World Markets Research Center Ltd, London, 2004 46 51. Valet G., Cytomics an entry to biomedical cell systems biology, Cytomet ... more details
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