- Proteopedia
infobox Website name Proteopedia logo File Proteopedia logo.gif screenshot caption url http proteopedia.org wiki index.php Main Page proteopedia.org type of organization Nonprofit location type Internet encyclopedia project Online encyclopedia language English language English registration owner author Joel L. Sussman, Eran Hodis, and Jaime Prilusky launch date 2007 commercial No alexa current status Perpetual work in progress slogan Life in 3D Proteopedia is a wiki , 3D encyclopedia of protein s and other molecule s. ref name pmid18673581 cite journal author Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL title Proteopedia a scientific wiki bridging the rift between three dimensional structure and function of biomacromolecules journal Genome Biol. volume 9 issue 8 pages R121 year ... J, Sussman JL title Proteopedia A collaborative, virtual 3D web resource for protein and biomolecule .... L. title Proteopedia A status report on the collaborative, 3D web encyclopedia of proteins and other ... format work publisher Proteopedia pages language archiveurl archivedate quote accessdate ref hemoglobin , ref name urlHemoglobin Proteopedia, life in 3D cite web url http www.proteopedia.org wiki index.php Hemoglobin title Hemoglobin author authorlink coauthors date format work publisher Proteopedia ... II Proteopedia, life in 3D cite web url http www.proteopedia.org wiki index.php Photosystem II title Photosystem II author authorlink coauthors date format work publisher Proteopedia pages language ... added content is free and covered by the GNU Free Documentation License . Proteopedia is hosted ... pages language archiveurl archivedate quote accessdate ref at the Weizmann Institute of Science . Proteopedia ... annual Labbies, our prizes for the best Web based multimedia by labs Website Winner Proteopedia ... structure External links http proteopedia.org Proteopedia website Category Online encyclopedias Category ... Biochem stub Biotech stub it Proteopedia ... more details
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- File:Proteopedia logo.gif
Summary Non free use rationale logo Article Proteopedia Use Infobox Used for Proteopedia Owner Israel Structural Proteomics Center, Weizmann Institute of Science Source www.proteopedia.org History Licensing non free logo Website logos ... more details
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- Wheat germ agglutinin
Wheat germ agglutinin or WGA is a lectin that protects wheat Triticum Triticum vulgaris from insects, yeast and bacteria. An agglutinin protein, it binds to N acetyl D glucosamine and Sialic acid . N acetyl D glucosamine in the natural environment of wheat is found in the chitin of insects, and the cell membrane of yeast & bacteria. WGA is found abundantly but not exclusively in the wheat kernel, where it got the germ name from. In mammals the N acetyl D glucosamine that WGA binds to is found in cartilage ref http www.springerlink.com content l436342163g6m764 ref and cornea ref http onlinelibrary.wiley.com doi 10.1002 cne.902680202 abstract ref among other places. In those animals sialic acid is found in mucous membranes, e.g. the lining of the inner nose, and digestive tract. See also Proteopedia http www.proteopedia.org wiki index.php 2uvo 2uvo High resolution crystal structure of Wheat Germ Agglutinin in complex with N acetyl D glucosamine Proteopedia http www.proteopedia.org wiki index.php 2uwg 2uwg Crystal structure of Wheat Germ Agglutinin isolectin 1 in complex with glycosylurethan References Reflist Lectins Biology stub Category Immunology Category Carbohydrates Category Proteins Category Glycoproteins Category Lectins ... more details
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- Metalloproteinase
Metalloproteinases or metalloproteases constitute a family of enzyme s from the group of protease s, classified by the nature of the most prominent functional group in their active site . These are proteolysis proteolytic enzymes whose catalytic mechanism involves a metal. Most metalloproteases are zinc dependent, but some use cobalt . The metal ion is coordinated to the protein via three ligands . The ligands co ordinating the metal ion can vary with histidine , glutamate , aspartate , lysine and arginine . The fourth coordination position is taken up by a labile water molecule. There are two subgroups of metalloproteinases exopeptidase s metalloexopeptidase s Enzyme Commission number EC number 3.4.17 . endopeptidase s metalloendopeptidase s 3.4.24 . Well known metalloendopeptidases include ADAM protein s and matrix metalloproteinase s. Treatment with chelating agent s such as EDTA leads to complete inactivation. EDTA is a metal chelator which removes zinc, which is essential for activity. They are also inhibited by the chelator orthophenanthroline . External links The MEROPS online database for peptidases and their inhibitors http merops.sanger.ac.uk cgi bin family index?type P M Metallo Peptidases MeshName Metalloproteases eMedicineDictionary Metalloproteinase Proteopedia http proteopedia.org wiki index.php Metalloproteases Metalloproteases See also Matrix metalloproteinase The Proteolysis Map Category EC 3.4.24 Category EC 3.4.17 hydrolase stub Proteases de Metalloproteasen fr M talloprot inase id Metaloprotease it Metalloproteasi he nl Metalloprotease pt Metaloprotease ... more details
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- Soman
wiki index.php AChE inhibitors and substrates AChE inhibitors and substrates in Proteopedia http proteopedia.org wiki index.php 2wfz 2wfz in Proteopedia http proteopedia.org wiki index.php 2wg0 2wg0 in Proteopedia http proteopedia.org wiki index.php 2wg1 2wg1 in Proteopedia http proteopedia.org wiki index.php 1som 1som in Proteopedia Chemical warfare Cholinergics Category Acetylcholinesterase ... more details
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- List of biological wikis
multiple issues unreferenced July 2010 notability July 2010 lead missing July 2010 This is a list of wikis focusing on biology . Taxonomy Wikispecies http www.theplantencyclopedia.org index.php The Plant Encyclopedia About Plant Encyclopedia Neuroscience http wiki.cns.org wiki index.php Main Page NeuroWiki http neuro.imm.dtu.dk wiki Brede Wiki Neuroscience wiki with results for neuroimaging studies. NeuroLex is a dynamic lexicon of neuroscience concepts. Microbiology http microbewiki.kenyon.edu index.php MicrobeWiki MicrobeWiki A Microbiology wiki http ecoliwiki.net Ecoliwiki comprehensive information on Escherichia coli Genes and Genetics http www.wikigenes.org WikiGenes Gene wiki http dx.doi.org 10.1038 ng.f.217 http www.snpedia.com SNPedia A wiki database of genetic polymorphisms see SNPedia http annotathon.univ mrs.fr Metagenes index.php Metagenes Metagenes Student annotations of metagenomic DNA sequences http homes.esat.kuleuven.be bioiuser chdwiki index.php Main Page CHD Wiki Wiki for geneticists, clinicians, and molecular biologists studying Congenital Heart Defects. http seqanswers.com wiki SEQanswers SEQanswers wiki Wiki for Next Generation DNA sequencing analysis tools and methods. Biological pathways http wikipathways.org WikiPathways Wiki for curation of biological pathways http dx.doi.org 10.1371 journal.pbio.0060184 Proteins PDBWiki &mdash A discussion forum for macromolecular structures Proteopedia &mdash Annotation of protein structures and other biomolecules TOPSAN &mdash Annotation of protein structures External links http nettab.referata.com wiki BioWiki List of biowikis by NETTAB 2010 Workshop on Biological Wikis participants. DEFAULTSORT List Of Biological Wikis Category Wikis Biological Category Biological databases ... more details
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- Lectin
of leptin. See also multicol Concanavalin A , Phytohaemagglutinin Con A en Proteopedia 1bxh , Pokeweed lectin Proteopedia 1uha , Artocarpus lectin Proteopedia 1toq , Pterocarpus lectin Proteopedia 1q8v , Urtica lectin Proteopedia 1en2 Toxalbumin References Reflist Further reading refbegin cite ... wiki index.php Main Page Proteopedia shows more than 800 three dimensional molecular ... more details
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- Primase
Proteopedia Helicase binding domain of Escherichia coli primase http proteopedia.org wiki index.php 2r6c Proteopedia Complex between the DnaB helicase and the DnaG primase References Reflist Polymerases ... more details
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- Structural biology
Chaperonin Structural genomics Stereochemistry Resolution electron density Proteopedia The collaborative ... more details
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- Acetylcholinesterase
Services Proteopedia Acetylcholinesterase Proteopedia AChE inhibitors and substrates Proteopedia AChE inhibitors and substrates Part II Proteopedia AChE bivalent inhibitors AChE bivalent inhibitors PDB ... more details
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- PDBWiki
website operated by KOBIC . References references See also Proteopedia The Wikipedia WikiProject ... more details
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- Adenylate cyclase
cyclase Interactive 3D views of Adenylate cyclase at Proteopedia Adenylyl cyclase Phosphorus oxygen ... more details
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- Lac repressor
in Proteopedia . Transcription DEFAULTSORT Lac Repressor Category Gene expression nl Lac onderdrukker ... more details
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- Abrin
Refimprove date March 2011 Image Abrus precatorius pods.jpg thumb Jequirity Abrin is a toxalbumin that is found in the seeds of a plant called the lucky bean , rosary pea or jequirity pea . Abrin is similar to but far more deadly than ricin , the toxin found in the seeds of the castor oil plant . ref cite journal author Dickers KJ, Bradberry SM, Rice P, Griffiths GD, Vale JA title Abrin poisoning journal Toxicological reviews volume 22 issue 3 pages 137 42 year 2003 pmid 15181663 doi 10.2165 00139709 200322030 00002 ref It is classed as a Select Agent under U.S. law . Physical properties Abrin is a lectin Proteopedia 1abr and can be made in the form of a powder, a mist, a pellet, or it can be dissolved in water. Powdered abrin is yellowish white in colour. Abrin is a stable substance, meaning that it can last for a long time in the environment despite extreme conditions such as very hot or very cold temperatures. Use Abrin is not known to have been weaponised. ref http www.bt.cdc.gov agent abrin basics facts.asp Overview at Centers for Disease Control and Prevention ref The rosary pea , which is the source of abrin, is common to many tropical areas throughout the world and is sometimes used as a herbal remedy. The seeds of the rosary pea have been used to make beaded jewelry, which can lead to abrin poisoning if the seeds are chewed and swallowed. The outer shell of the seed protects the contents from the stomachs of most mammals. Abrin has some potential medical uses, such as in treatment to kill cancer cells. Toxicity Abrin works by penetrating the cells of the body and inhibiting cell protein synthesis. By attaching to a carbohydrate chain on the cell surface, the abrin molecule anchors itself to the cell, is subsequently engulfed and enters the inner parts of the cell where it reacts with a ribosomal subunit and interferes with the normal protein synthesis process of the cell. Without these proteins, cells cannot survive. This is harmful to the human body and wi ... more details
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- Glucocerebrosidase
Glucocerebrosidase Proteopedia Acid beta glucosidase PDB Gallery geneid 2629 Sugar hydrolases Sphingolipid ... more details
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- VEGF receptors
reflist External links MeshName VEGF Receptors Proteopedia Vascular Endothelial Growth Factor Receptor ... more details
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- Protein structure database
, Protein Information Resource PIR , PRF , and Protein Data Bank PDB Proteopedia the collaborative ... more details
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- Paraoxonase
links Proteopedia 1v04 References reflist Category EC 3.1 zh ... more details
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- Protein quaternary structure
complexes Proteopedia &mdash http www.proteopedia.org Proteopedia Home Page The collaborative, 3D encyclopedia ... more details
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- Calmodulin
calcium may not be considered their principal function in the cell. See also Proteopedia page for http ... more details
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- Angiotensin-converting enzyme
17504232 doi 10.2174 138161207780618911 refend External links Proteopedia Angiotensin converting enzyme ... more details
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- Spectrin
Proteopedia 2fot the complex between calmodulin and alpha11spectrin Spectrin repeat References Reflist ... more details
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- Jmol
mechanics modeling Chemistry Development Kit CDK Molecular graphics Proteopedia PyMOL mw Extension ... more details
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- Ankyrin
2 External links MeshName Ankyrins Proteopedia 1n11 Ankyrin R Cytoskeletal proteins Category Peripheral ... more details
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- Tryptophan hydroxylase
tryptophan hydroxylase in http www.proteopedia.org Proteopedia br Oxygenases Neurotransmitter ... more details
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